Your inserted inputs on [SSPACE_Basic_v2.0_linux] at Tue Sep 23 15:45:18 2014:
Required inputs: 
	-l = library.txt
	-s = /mnt/galaxy/galaxy-dist/database/files/001/dataset_1231.dat
	-b = sspace_out.tmp

Optional inputs:
	-x = 1
	-z = 0
	-k = 5
	-a = 0.7
	-n = 15
	-T = 1
	-p = 0

Contig extension inputs:
	-o = 20
	-t = 0
	-m = 32
	-r = 0.9


=>Tue Sep 23 15:45:18 2014: Reading, filtering and converting input sequences of library file initiated

Reading read-pairs Lib1.1 @ 0       
Reading read-pairs Lib1.1 @ 1000000         
Reading read-pairs Lib1.1 @ 2000000         
Reading read-pairs Lib1.1 @ 3000000         
Reading read-pairs Lib1.1 @ 4000000         
Reading read-pairs Lib1.1 @ 5000000         
Reading read-pairs Lib1.1 @ 6000000         
Reading read-pairs Lib1.1 @ 7000000         
Reading read-pairs Lib1.1 @ 8000000         
Reading read-pairs Lib1.1 @ 9000000         
Reading read-pairs Lib1.1 @ 10000000         
Reading read-pairs Lib1.1 @ 11000000         
Reading read-pairs Lib1.1 @ 12000000         
Reading read-pairs Lib1.1 @ 13000000         
Reading read-pairs Lib1.1 @ 14000000         
Reading read-pairs Lib1.1 @ 15000000         
Reading read-pairs Lib1.1 @ 16000000         

                                        
------------------------------------------------------------

=>Tue Sep 23 15:48:29 2014: Building Bowtie index for contigs

=>Tue Sep 23 15:48:29 2014: Mapping reads to Bowtie index

100000
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800000
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1000000
1100000
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2000000
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3000000
3100000
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4000000
4100000
4200000
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4800000
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5000000
5100000
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5600000
       
=>Tue Sep 23 16:13:40 2014: Contig extension initiated

1
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17
                
LIBRARY Lib1
------------------------------------------------------------

=>Tue Sep 23 16:13:43 2014: Reading contig file

                
=>Tue Sep 23 16:13:43 2014: Building Bowtie index for contigs

=>Tue Sep 23 16:13:43 2014: Mapping reads to contigs. Reading bowtie output and pairing contigs

1000000
                
=>Tue Sep 23 16:17:48 2014: Building scaffolds file

1
2
3
4
                
=>Tue Sep 23 16:17:48 2014: Merging contigs and creating fasta file of scaffolds

                
------------------------------------------------------------

=>Tue Sep 23 16:17:48 2014: Creating summary file
**************************************************

Process run succesfully on Tue Sep 23 16:17:48 2014 in 32 minutes and 31 seconds