Step | Annotation |
---|---|
Step 1: Input dataset
select at runtime
|
Read-1 in paired end datasets |
Step 2: Input dataset
select at runtime
|
Read-2 in paired-end dataset |
Step 3: Input dataset
select at runtime
|
Reference genome |
Step 4: Trim Sequence by Quality
Output dataset 'output' from step 1
30
|
|
Step 5: Trim Sequence by Quality
Output dataset 'output' from step 2
30
|
|
Step 6: Merge Pair
Output dataset 'output' from step 4
Output dataset 'output' from step 5
|
|
Step 7: Reduce the coverage
Output dataset 'output' from step 6
paired end
10
4
1e8
|
|
Step 8: Velvet
Interleaved paired-end reads AND Single-end reads
Output dataset 'peoutput' from step 7
Output dataset 'seoutput' from step 7
35,45,55,65
|
|
Step 9: Reference-guided Scaffolding
Output dataset 'output' from step 8
Output dataset 'output' from step 3
|
|
Step 10: Scaffolding pre-assembled contigs using paired-read data
Output dataset 'output' from step 9
Output dataset 'output' from step 4
Output dataset 'output' from step 5
350
FASTA
Default Settings
|
|
Step 11: Quality Assessment For Genome Assembling
Output dataset 'output' from step 3
Output dataset 'sspace_res' from step 10
500
|
|
Step 12: SNV detection
Output dataset 'output' from step 3
Output dataset 'sspace_res' from step 10
|
|
Step 13: Create Circos Graph for Draft Genome Assemblies visualization
Output dataset 'output' from step 3
Output dataset 'sspace_res' from step 10
|
|
Step 14: Draft vs. Reference genome comparison
Output dataset 'output' from step 3
Output dataset 'sspace_res' from step 10
Reference Coordinates
|
yinan
All published workflows
Published workflows by yinan